1// Copyright 2016 Google Inc. 2// 3// Licensed under the Apache License, Version 2.0 (the "License"); 4// you may not use this file except in compliance with the License. 5// You may obtain a copy of the License at 6// 7// http://www.apache.org/licenses/LICENSE-2.0 8// 9// Unless required by applicable law or agreed to in writing, software 10// distributed under the License is distributed on an "AS IS" BASIS, 11// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 12// See the License for the specific language governing permissions and 13// limitations under the License. 14 15syntax = "proto3"; 16 17package google.genomics.v1; 18 19import "google/api/annotations.proto"; 20import "google/genomics/v1/readgroup.proto"; 21import "google/protobuf/struct.proto"; 22 23option cc_enable_arenas = true; 24option go_package = "google.golang.org/genproto/googleapis/genomics/v1;genomics"; 25option java_multiple_files = true; 26option java_outer_classname = "ReadGroupSetProto"; 27option java_package = "com.google.genomics.v1"; 28 29// A read group set is a logical collection of read groups, which are 30// collections of reads produced by a sequencer. A read group set typically 31// models reads corresponding to one sample, sequenced one way, and aligned one 32// way. 33// 34// * A read group set belongs to one dataset. 35// * A read group belongs to one read group set. 36// * A read belongs to one read group. 37// 38// For more genomics resource definitions, see [Fundamentals of Google 39// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) 40message ReadGroupSet { 41 // The server-generated read group set ID, unique for all read group sets. 42 string id = 1; 43 44 // The dataset to which this read group set belongs. 45 string dataset_id = 2; 46 47 // The reference set to which the reads in this read group set are aligned. 48 string reference_set_id = 3; 49 50 // The read group set name. By default this will be initialized to the sample 51 // name of the sequenced data contained in this set. 52 string name = 4; 53 54 // The filename of the original source file for this read group set, if any. 55 string filename = 5; 56 57 // The read groups in this set. There are typically 1-10 read groups in a read 58 // group set. 59 repeated ReadGroup read_groups = 6; 60 61 // A map of additional read group set information. 62 map<string, google.protobuf.ListValue> info = 7; 63} 64